mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGCAGTCTCCTTGGCTAGCCT GATAGCCAAGGATGACTTGCCTG CCTTACTTGTCGATAAGGGCCTGCCTCTGATAGCCAAGGATGACTTGCCTGTGTCCTTTGTGCCGAAGGATCAGAAATGTGAGCCTTTGAGATAGATGGTTCATAGGCAGTCTCCTTGGCTAGCCTGAGTGGCCCATATTGCCCATGCCAG CAGCAAGAGGTGATGGAGCTAGTTGGTACGCAGAGGCAAAGCCTTACTTGTCGATAAGGGCCTGCCTCTGATAGCCAAGGATGACTTGCCTGTGTCCTTTGTGCCGAAGGATCAGAAATGTGAGCCTTTGAGATAGATGGTTCATAGGCAGTCTCCTTGGCTAGCCTGAGTGGCCCATATTGCCCATGCCAGGCTTGAGTCTCTTTGACTACTAGTGCATGCAATTTCGGATGGGCCGGTGGCAGACTGGCAGCACTATGAATTCTTGCAATACTGAATGAAAGGACATCAAACAGGAGTTGGAGTACCTGTGGGGTGGAGTACTTGTGTCTGGTTTCATCTTAGTGATGATGATTACCTGAAATGATCTGAACTTGAGTACCAAAAATTGTATAAAAACAAAGAAAACAGAAGCCATTGAAGTAGAGAACATTGACATGTATCACCACTCCCCGATAGAGGAATTCCACTGTCGCCAATAGTCATTTAGTGTGCCTGTCGACTTCGTACACGATAACACAAAGAAGACAGAAATGAACTCACAGAAATACACTAGCTCTTGTGTGGCCTCGGAGCTGTGGAAAGAGAGGAATGCATCGTATAATCCTTTTGGAGGCAATGGTCCTATTGATCTGTGTATAAACCTCTTTACCCTTCTTAATTGAAAGGCAGAGCTGCTACCATTACCTTAAAAAAGAGAGAGAGAGAAATGCAAGGTGCTTCTGTGGAGGCGACACCCAACTACCGGAACTGCTGGCGTTGATCAGACATGAAGTGGAGCTGTGGGTGTAGGCTGGAGCGAAGAACCTGGATTGTTTACTTCAGTGATGAGTAATAATAGGCTAGCCGGTGTCCAAACTAGGAAGAACGAAAGCTTTGTTGATTATTCCAAAGCCCACCCTATTGTATTCAAACTGCTCCTTTCTTAATACAAAAGCGTGCAGTC 4 2 3' arm Sorghum_bicolor mirnest MIR169_2 2e-59 sbi-MIR169l 5e-50 -57.9 ..........(((((.(((((...(((...((((((((((.((((.(((((((.(((((((..((((((.(((......))).))))))..))))).))..)))))))))))))))))))))....))).))))).))))).......... (-57.9)