mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TAGCCAAGGATGACTTGCCTG GGCAGTCTCCTTGGCTAGC CCTGCCTCTGATAGCCAAGGATGACTTGCCTGTGTCCTTTGTGCCGAAGGATCAGAAATGTGAGCCTTTGAGATAGATGGTTCATAGGCAGTCTCCTTGGCTAGCCTGAGTGG CAGCAAGAGGTGATGGAGCTAGTTGGTACGCAGAGGCAAAGCCTTACTTGTCGATAAGGGCCTGCCTCTGATAGCCAAGGATGACTTGCCTGTGTCCTTTGTGCCGAAGGATCAGAAATGTGAGCCTTTGAGATAGATGGTTCATAGGCAGTCTCCTTGGCTAGCCTGAGTGGCCCATATTGCCCATGCCAGGCTTGAGTCTCTTTGACTACTAGTGCATGCAATTTCGGATGGGCCGGTGGCAGACTGGCAGCACTATGAATTCTTGCAATACTGAATGAAAGGACATCAAACAGGAGTTGGAGTACCTGTGGGGTGGAGTACTTGTGTCTGGTTTCATCTTAGTGATGATGATTACCTGAAATGATCTGAACTTGAGTACCAAAAATTGTATAAAAACAAAGAAAACAGAAGCCATTGAAGTAGAGAACATTGACATGTATCACCACTCCCCGATAGAGGAATTCCACTGTCGCCAATAGTCATTTAGTGTGCCTGTCGACTTCGTACACGATAACACAAAGAAGACAGAAATGAACTCACAGAAATACACTAGCTCTTGTGTGGCCTCGGAGCTGTGGAAAGAGAGGAATGCATCGTATAATCCTTTTGGAGGCAATGGTCCTATTGATCTGTGTATAAACCTCTTTACCCTTCTTAATTGAAAGGCAGAGCTGCTACCATTACCTTAAAAAAGAGAGAGAGAGAAATGCAAGGTGCTTCTGTGGAGGCGACACCCAACTACCGGAACTGCTGGCGTTGATCAGACATGAAGTGGAGCTGTGGGTGTAGGCTGGAGCGAAGAACCTGGATTGTTTACTTCAGTGATGAGTAATAATAGGCTAGCCGGTGTCCAAACTAGGAAGAACGAAAGCTTTGTTGATTATTCCAAAGCCCACCCTATTGTATTCAAACTGCTCCTTTCTTAATACAAAAGCGTGCAGTC 0 2 5' arm Sorghum_bicolor mirnest MIR169_2 3e-57 sbi-MIR169l 4e-50 -44.7 ((...(((...((((((((((.((((.(((((((.(((((((..((((((.(((......))).))))))..))))).))..)))))))))))))))))))))....))).)) (-44.7)