mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GTACTCCCTCCGTTCCAAATA TTTGGAACTGGAAGAGTACTC TACTTCAAAAAGTACTCCCTCCGTTCCAAATAAAGTGAAAATAATTTGGAACTGGAAGAGTACTCCGGA CTCACCTGCCGCTACCTCGTCCGCCACGGAGCCTACGCGCTCCTCGTCCTCTTCCTCCTCAAGATGGCCGCCTTCTACCTGTCTGGGCAGGCCGTCGACGTCATCCCGTGGTGGGTGCGGATCTCCTGGATCGTCGTTGTCGGCACCGCCATTGCGGTCAGCAACCTGTGGATTTGGAACCTCTGGAAGGAGCTCGTCAGGGAATGGAAGCAAGCCCCTTCCAAGTCAAAGAAAGACACATAGGCCGCCACCTCACTCTAACCATGTACGGGTGTACGAGCCATATGTAGCTTCTTAATCTTTCCAATTCCAAATACATCCGAGCCAATTGACACGGATGATGCAGACTGATGATATGTTAAAAACCAATTTCGGATGACATTGGTGGAGGATGCTTATATCTGTAAGATACACCTATTCATTCTTTGATTGGAAAATCAGGTGCGTGTGCCAGAAAGTCTACTTTTACTTCAAAAAGTACTCCCTCCGTTCCAAATAAAGTGAAAATAATTTGGAACTGGAAGAGTACTCCGGA 2 2 5' arm Sorghum_bicolor mirnest MIR1122 0.0002 tae-MIR1137 0.0007 -20.9 ..........(((((((..((((((((((((...((....)).))))))))).))).)))))))..... (-20.9)