mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ATAGTGTGTTGTGTTTGTGTA CGCGAGAGCGACACGCGCGCG GAGAGCATACGCGAGAGCGACACGCGCGCGCACGTGACGAGGATGTAGTGTATAGTGTGTTGTGTTTGTGTATTTGTTGTG GAGAGCATACGCGAGAGCGACACGCGCGCGCACGTGACGAGGATGTAGTGTATAGTGTGTTGTGTTTGTGTATTTGTTGTGTTTGTTGTTGTTGTGGGAGGCGCTTGTTGCGTTGTACAGCAGGGGGGATAGGTAGAAAGAAGTGGCTGGGAGATAGTTATTGAGAAGAGAGCTAGGTGAGAGGCCGTAGCCTGTGGAGGATGAGGGCGGGTCTGTGTGGTGGTCGACCTTACAAGTGGTAAGGCAGACTCAGGTAGGGTGGAAGGGTCGAGCCGGGTGGCAGGGGGCAGAGACGGGTGGTCGCCGCCTGTGGTAACGCGGGGGAGGGCAGTGTGCGTGCGAGTGGCTGGAGGAGGAGACCAGCGGATGGGTCGGTTTGGGTGTTGGCTGCGNAGAACGGCGGCAGGAGTGAGGTGGCGTGTGAGATGGAATGTAAACGACAGTATCAGAGGCCTTGGGGTAGCAGCTGAGGTGAGATAGGAGGCTGTAAGAGAGGGGGAGAGAGAGGTCGGATATGCAGCGGAATGAGAGGATGGAAGGCCGAGTAGCCAGTGTGAGCGGCGGGAAGCAGGGGAGTGAAAGGAGGAGTGGCAGGCGAAAGGGAGAAGGAAGAGGAGAGAGAGTGAGTAGGCGACAGTGGTTGGAGAGAGAGAGGCGTAGTGGAGGAGGGAAGGAGGTGAGTGCGCGTGGGAGAGGAGTGTGGGATAGCAGACAGCAGCAATTTGCGATTCTTTTCATTTATGTGTATTTAATAGTTATTCAGATTCTTGTCTCATAATTATACTATATTTAAGTAAGAGAGTCGTTAGTGACTAGATGTATGTGTAATGAAGTCACACACGAGTAGAGAAGAAATCGATAGAGGGNTATGTATTAGACAGAGGCTGCATTAGGTATATGATAAGAGTAGTGTATTAACTTTATATTTAATCGTCATTGTATCAGACTGCTGTCACACAAAGATTTTTATCATTCTGAGGTTCAAAGAAAAGTATTTATAATCCTAACATATAGATGTGCTATATTAGTATAACGTAAATGTTAGTTGAACACATT 4 0 3' arm Chlamydomonas_reinhardtii mirnest 100 100 -26.8 ...((((((((((((.(((((((((....((((...((......)).))))...))))))))).))))))))..))))... (-26.8)