mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCTGGGAAGGCAAATGGCCGA GGCCGCTGTCGACCTCGGCAA GCAAGTTGGTAGCTGGGAAGGCAAATGGCCGACGAACACGGCCGCTGTCGACCTCGGCAATGCCGAAC CTGTGACCATCCCTTACACGGGATAATTAGTTACTAATTGCCTCTTATATGAAAGCGATTGGTAGCGATTGACATGTACGTCAACAGTCCGTCTGCACAAATACTCGTGGCCTACAATACGAAGAAGAGCGTTTACAGGCTTGGCAAAGTATTAATCTACTGAGCCAAAAACAGGTTTACACATTGAAAACATCGCAGCGCACGTCGCCTGGTAGCGACTTACGAAGCTCTGGTGATCGCTGGTCCTAAAACTGGGATCTTGATTGTGTGCTAAAGACCTTGTGCCCGTCTCATGCGTGAAATCTGGCCTTATAACAGCAGAGAAGCCCAACATAATTTCTTTTTCACAGTACCCAACACAAAACATGCTGACCACTGGTTCCCAAACCCCCGCGCTCAAAGTCACTCTCGAGGCTGGACAAGGCAGAAAAGGCTCCAAGGATGACGTCACAGACAGAGATCGCTCCCCCGTTGAGGACGCCTTCTACGAGTCTTTCCTCCTCCAGTCTCGTTCTGATGTCGAGAGTCTCTACGCGTCTAACATCTACTGGAGTCAGAAACACGCCAAGGAAGTCAAGGACTTGGACAGACAAAAAATGGTATCCTTAACATCCATGACCAAAGGTCAAAAAGACATGCTGAAGAAGATGAACCTCTTGCAGCAAAAACAAGAGCAGATTCAGGAAGAAAAGCGGCGCAAGTTGGTAGCTGGGAAGGCAAATGGCCGACGAACACGGCCGCTGTCGACCTCGGCAATGCCGAACGATCATCGACGAGCTGAAGAGAATCGATTGCGCTCTGGGTCTATGCCCTTTTTAGATCCGCTAGATCTTTCGATGGCATCACGAAAT 4 2 5' arm Nematostella_vectensis mirnest 100 100 -25.3 .....((((((((((((..((((..((((((.......)))))).))))...))))))..)))))).. (-25.3)