mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CGTGTCAGAGGTGCATTTACA TAAATGCACTATCTGGTACGAC TTCTTCCTGAGTTTTGGGGTACGTGTCAGAGGTGCATTTACATCGAACTATTCCAGTTGAGGTATTTGTAAATGCACTATCTGGTACGACATTCCAGAATCGATAATC CCCACGCGTCCGCAACGGGAAACCGGTGGGAATGCATATCGTAACGAGCAGGTTAAAAGTTCTAATAGAATCGAGAAATGAAATAGGTAAACCCAAGTTTGTTTGTTTGTTTGTTTGTTTGTTGTTTCTGACCATTACATCGAAGATACTGACGGTGAGGTTAATGATGCTAGGAAAAAAAAAGAAACCAGCGATCCCTTTTTTTATTTATAATCCAACCAAAACCATTCGGTGATATGCCTTTCTCCATTCTTCCTGAGTTTTGGGGTACGTGTCAGAGGTGCATTTACATCGAACTATTCCAGTTGAGGTATTTGTAAATGCACTATCTGGTACGACATTCCAGAATCGATAATCGACGAGCGAGAAACGGGAGAAAGCGAGAACGATGCACGTAGAAACAGAGTCAGCACTAGCCAACTGCAAGGGTAGAGTGCAGTAGCGTACTTACGCGTGAAGCGCGCACGATCTCGCGCGTTGAATCATCAAACGCGCGGGCTGGACGCAATGGACGGCCGACTCATTGCGTCCTGCACTGTAGGTGTGTAGGTTAATATCGGTGAACATTTACATTTACGCCAGTGGCCATCAACAGCAGTAGCAACAGCAGTAGCAACAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGTTGGACAGCAATAGTCACCATCTTCGCTAGAACACAGTGTGTTGTCTGTGCCGTTGTCTAT 0 1 5' arm Anopheles_gambiae mirnest mir-277 4e-53 aga-mir-277 5e-46 -31.3 ..........((((((((((.(((((((((((((((((((((((.((((.....))))..))....)))))))))))).)))))))))..))))))))))........ (-31.3)