mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTTGTTTTGTTTTTTGTTTTA GAACGAACCAACACAGGAA TTCCCATCGATTGAACGAACCAACACAGGAAGGAAACAAAAAGTGTAAGGAGAGGCGATGCCAATATATTTCTTATATATATTGTTTCTTTTTTATTCATTTTTTTATTCATTTTTTTTGTTTTGTTTTTTGTTTTATTTACTGCA GGGGAACACATTTCCCGCATTGGATTTTTATTTTATTTTTCTTTTGCTCGCCATTTTGTNCGAAATAAAAAATGACTGATGGTAAATATAGTAAAGATCGTGGGTGAATAAGAACATGCATGTGGCTGATGGTATTACATTTAACACTTTTTTGTTTTTTATTCGGGAGGGATAGGAAGAGGAGCTGAGTTGCATTCGTTTTTTTTTCTCCCCCATTTTTCAGTGATGACAAAGTGGTGGGTGAAAATAAGAAGATTATAGCAGTTACATGTATAATAGCTGGAGGAGGAAAGAGTTGAAGGGAAGGTCGGACAGAGATTTTAAGAATTAGAATTTGCGTGTGTTTCTTCACAATTCCCTTGATTCAACAGTATATAGAGATACGTTAGAAAAATTTGAACTTTCCCATCGATTGAACGAACCAACACAGGAAGGAAACAAAAAGTGTAAGGAGAGGCGATGCCAATATATTTCTTATATATATTGTTTCTTTTTTATTCATTTTTTTATTCATTTTTTTTGTTTTGTTTTTTGTTTTATTTACTGCATCCAATCTCCTCCGTTGTGTTCTCCTTCAGCAGATGAAACTGTCGCAAAAATTCAATATTATATCATGAAACATTTTTTCTTTTTTTAAATATTGAAAGTGTGAATGTGACATCTGGG 3 2 3' arm Daphnia_pulex mirnest 100 100 -28.9 ........(((.(((((((.(((.(((((((((((..((((((((.((((((((((((((...(((((.....))))).))))))))))))))....))))))))..)))...)))))))).)))...))))))).)))....... (-28.9)