mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CACACACATACACACACACGG GTGTGTGTGCTATGTGGTTGCA ACACACACATACACACACATACACACACACGGATTTTTCTTGTTTTACATGTCACAAAGGGAGAGGAGACTGCAGCACAGCAACTCGCGCGATTCTACGACATCCAAAATAACCAGCACGAATGTGTGTGTGCTATGTGGTTGCACCGACGG CGCATTCAAATTATTAATATTATTATTACATATTGTTCATTAAAAAAGGGAGTGGGTGTGACTTAGTGCAAACAAATGAATTGTTTTATATATTCCCGAAAAAAAGCCAAAAATCATCCGACCCGGAGTAGAAGGTGGACAGCAGCGACGAGGCCCAAATAAGCCCAGAAGAGATCGCGATGCCTTGAGATCGCCGAATTGCAAAAATCTTCCTCGCAGAAACAAGTCATCCCCTTGCGTTTGTTACCTTCTTTCAGACAGACGTGATCGACGATGAAATAATTGACAATCAGCTGCTCCGTACACATCCGCCTCACGCGTTCCTTGGGTGAGTAGCGATGTTCGACGATTTTAACACAACAACCCTTACACGTTTTGAAAGGTGGGCGTTCGTGCATTGGGGCCGATTCATTGATATGTTTACAAAGCGGATTGTGGTAACTGTCGCAATCGTAGCACAAAATCGTCCGGCCGGATCGGTTTATGCACTCCTCTTCGGCCGAAATGATGTTGGCCTGCAGACAAACCAAAGTGATGGAGAAGAAGACGGAAAGGAACCCAATCAAATTGCGATCCTGCATCGTTTGGTGTGAGCAGAAAATGCGGTCGAAGAAAAAATCCCACACACACATACACACACATACACACACACGGATTTTTCTTGTTTTACATGTCACAAAGGGAGAGGAGACTGCAGCACAGCAACTCGCGCGATTCTACGACATCCAAAATAACCAGCACGAATGTGTGTGTGCTATGTGGTTGCACCGACGGGA 5 1 5' arm Daphnia_pulex mirnest 100 100 -31.2 ...............((((((((((((((((........(((((((..(((((........((((.....(((.((..........))))).))))..)))))..)))))))..........)))))))))).))))))((((...)))).. (-31.2)