mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GTGCTGTTTTTTTTCCTTTCA AGAGGAGGAGGAAGAAGAAGAA GGGAGAGGAGGAGGAAGAAGAAGAATCAAGATAAAAAAATCCACCTGGTTTCACACGTGCTGTTTTTTTTCCTTTCAGTTTAAAAGC ACAGATGTGGATCTCGAAGCAAGAGTACGATGAGTCGGGCCCATCCATCGTCCATCGCAAATGCTTCTAAACCCATTCGTCACCAACATCACCACAGCCGATACTTTGTAGTCACCTGGCGCAATAAGGTGGTGAAGAGGCTGATGAATGAAAGAGGGGAGAGGAGGAGGAAGAAGAAGAATCAAGATAAAAAAATCCACCTGGTTTCACACGTGCTGTTTTTTTTCCTTTCAGTTTAAAAGCAGTTTCTTATAATTTTGTTTCCACACAAATTTTTTTTTTCAATCTCCAAACTCCTTTGTTTCCTTCATTTTGCGAGTAGTAGATTATCGTGACTTGGTGTGTTTGTTAGCTGTTGACGCCTACCTACCATCATTCCGAAAAAACTTTTTTTTTTCGTTCGATTTCCGTTTTTTTTTTTGGAACAAGATAACAAAAAAATTCCTCTAGCCATTCCCGCAAACAAGAGCCAGCCTCTTTGCGCGCAAGTCACTTTGAGGTGTGCGTGTGTCTGTGTGTATTTTTCCCCCTCCCGTTTGAGAGTTGTGATAATAAAACTCTCGAAAGTTA 5 1 3' arm Daphnia_pulex mirnest 100 100 -14.5 ..((((((((((((((..((..((((((.(((......)))....))))))........)).))))))))))))))........... (-14.5)