mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGTTTGATTTTTCGTTTTCGT GTTAATGTAAATCAAACTGT TTCACTTCATTTTGTTAATGTAAATCAAACTGTCATTGTTTGATTTTTCGTTTTCGTCGTAATCGCC GCATTTTACTTTGGCAACTCGATATCAATTCACCATACACATTGGTCTTTTGTCGTGTTCTATTAGGGAGAAAGGAACTGCAAAACAATCCAAAAATACTCGAAGGACCGTGTATTATTATTATCTGGCCTCTGCACTATTTAAATTTAACCTTCACTTCATTTTGTTAATGTAAATCAAACTGTCATTGTTTGATTTTTCGTTTTCGTCGTAATCGCCCCAAAATAAATGAGCATCTTCCCGCTCAATTTGGTGACACAAATTTGTTTTACCTTGTTTTCTGCGGATATTGTTTCTTTGGCATGTTTGAGTGTCAACATCCATTCTGTACTTTGCAAAGTAAA 5 1 3' arm Strongylocentrotus_purpuratus mirnest 100 100 -10.7 ............((..((((.(((((((((.......)))))))))..))))..))........... (-10.7)