mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTTTTTTTTGGGTTTGTTTTT AAAGTGGGGGGGGGGGTAT CCTTTAAAGGGTTTTTTTTTTTTTTTTTTAATTTTTTTTTGGGTTTGTTTTTTTATTTTAAAAGTTTTTTTTCCCCCTGAAGGGGGCGGAAGGGTTTTAAAAGGAAAAAAGTGGGGGGGGGGGTATTTGGAAAAAGAGGAGGGAAATTTTTGGG TTTTTTTTTTTTTTTTTTTTTTTTAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTCCTTTAAAGGGTTTTTTTTTTTTTTTTTTAATTTTTTTTTGGGTTTGTTTTTTTATTTTAAAAGTTTTTTTTCCCCCTGAAGGGGGCGGAAGGGTTTTAAAAGGAAAAAAGTGGGGGGGGGGGTATTTGGAAAAAGAGGAGGGAAATTTTTGGGGGTAAATTTGGCGGGGGGGTATTGAAGGTGAAGGCCTCGCCGGGGGGGCTATGCGGGAGGTTTAAAAGGGGGGGGTTAAATGGGGGGGAAAGAAAGGGGGTTTTAAAAAAAAGGATGGGAAAAGGGGGGGTTTTAAAAAAAAAGTTTTTTTGGATGGGAAAGGGGTAGGGGGGCTTTGTTTACCGGGGGTTAGGGGGGGGGGGAAACGAAGGGGGGGAAAGGGGGGCCAAAAAAAGGGGGAGTATTGGTTTAAAAAAAAGGGGGGGGGGGGGTTTTTTAAAAATTTGGGGGGGGGGAGGAATAAAAAGAGGTGGGGTGGGGGAAACTTTTCCCCAATGGGATTTTTGGCCCCGGCCTCGGGGGAGTTTTAATTACCCCCCGGAATTTTGGGAAAAAAAAACCCAGGGATGGTTTTGAAAAAATGGGGGCGTTGAGGTGGAAAAAACGTTGCCGGGGGAGGGTAAAAAGACAATTTAGTATAAATTGGTGGGTCCGGAGAGGTTCAAAAAATGTTGGGGAAGGGGGGGGTTTCCCGGGGGGAAAAAAGGGGGTGTTTTCTGGGGAGAAAAAGGGGGGGGGTTCTTTGGGGGGAAAAACAAAATGCTGGGAAAGAGAGGGGGGGGGAAAAGAAAATTTTTTCGGGGGGGGGGGAAAGTGGGGAGGAGGGGGGGGGGAACTCCATTGTGGGGGGGGGGGGGGAAAGGAAAACGTTGGGTGGGGGGGGGGGGGGTGGCTTTTTTTGGGGCGGGGGGAGGGGGGGCGTTCTCTTTTTCGGGGGGGGGGGGGGGCGTTGGGCCCGGCCCCCGGGGGGGGGAGAGGGACCTTCGGGCGGCGGGGGGGGGTGTGGGAAGAAATATGCCGGGAAGAGGGGGAGGAGAACGCCGGGAAAAGAAGGG 4 2 5' arm Strongylocentrotus_purpuratus mirnest 100 100 -36.1 (((...(((((((((((((((((((((((((.((((((((...((..(((((((.((((((((.((((((.(((((.....))))).)))))).)))))))).)))))))..)).))))))))...)))))))))))))))))))))))))))) (-36.1)