mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCTGCTGTTGTTGCAGTAGGA TTCCTGGATGACATTACTG TAAATGTCCCAGCTGCTGTTGTTGCAGTAGGATTATTCTTCTTCCTGGATGACATTACTGGGTTTGAA ATATCTGGTAACCCAATAATGAGTGATGTAGAGTTTGACAACCTGAAAAAACAACTAAAGAAAGATGGAAGTGATATAGTGGCTGAGGGTCCAAGATGCAGTCTTCGTAGTAGAAAGGTTTACAGTGACCTGACTGTTGATTACCTCAAAATGTTCCTCATAAATGTCCCAGCTGCTGTTGTTGCAGTAGGATTATTCTTCTTCCTGGATGACATTACTGGGTTTGAAATTACATACCTTTTGGAGCTTCCAGAGCCATTTAGTTTTATCTTCACTTGGTTCGCGGCTCTGCCGTTCATATTATGGTTATCCTTTACGCTAACCAACGTCATTGTGAGGGATTTCTTGATATTGAAGGGCCTTTGTCCAAACTGTGGGACAGAGAATACTTCATTCTTTGGAACCATATTGTCAATTTCCAGTGGGGGTTCTACCAACACTGTCAAATGCACAAACTGTCAAACCGCTCTAGTATTTGATCAGGAAGATCGGTTGGATACATTGCCAGAAGGAAGTGAAGCTTGAGTTCGGGAGACCATGGATATGTTTGAAAGAAGAAGCTACT 2 2 5' arm Helianthus_paradoxus mirnest 100 100 -16.5 .....(.(((((.((.(((((((.(((.((((.......)))).)))))))))).)))))))..)... (-16.5)