mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCTGCTGTTGTTGCAGTAGGA TTCTTGGACGACATTACTG TAAATGTCCCAGCTGCTGTTGTTGCAGTAGGATTATTCTTCTTCTTGGACGACATTACTGGGTTTGAA GGGGTTGCATTGTCCACTCAACTCCACCACCATCACAGCAACCGGCGAAATGGCCTCGAAATTGTGTTTCGCCATAGCCTCTTCTCGTTTCGTCACTGCTCCGGTTCGGAGACCCTCTGCTGGTTTATCTTTATCCGGTTCGTATCGGTTGGCTGGGTCCAATGATCAGTCGATCAAGATGATCGGACGAGAGGTTGCGATTCGACGGAGATTGATTTTTATTTCCCCACAGGCCACTAGTGATCAGCCAGGTAAAGTTGAAGATGAATTTACTGCAGATTCTGTTGATAGCAACATAATGCCTTACTGCAGCTTAGAACAGAAGAAGAAAACAATTGGAGAAATGGAACAAGAATTTCTTCAAGCATTACAGGCATTCTATTACGAAGGCAAAGCTATCATGTCGAACGAGGAATTTGATAATCTCAAGGAGGAACTAATGTGGGAAGGAAGCAGTGTTGTAATGCTAAGCTCTGATGAACAGAAGCTTCTAGAGGCTACGATGGCGTACATATCTGGTAACCCAATAATGAGTGATGTAGAGTTTGACAACCTGAAAAAACAACTAAAGAAAGATGGAAGTGATATAGTGGCTGAGGGTCCAAGATGCAGTCTTCGTAGTAGAAAGGTTTACAGTGACCTGACTGTTGATTACCTCAAAATGTTCCTCATAAATGTCCCAGCTGCTGTTGTTGCAGTAGGATTATTCTTCTTCTTGGACGACATTACTGGGTTTGAAATTACATACCTTTTGGAGCTTCCAGAGCCATTTAGTTTTATCTTCACTTGGTTCGCGGCTCTGCCGTTCA 2 2 5' arm Helianthus_paradoxus mirnest 100 100 -17.4 .....(.(((((.((.(((((((.(((.((((.......)))).)))))))))).)))))))..)... (-17.4)