mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCTCTTCCTCTTCCTCTTCCT GACGAGGAACAGGGTGAGGAA TGGTTGAGTATCGGACGAGGAACAGGGTGAGGAATAATAGGACTCCGAGATCACCTTCTTCTTCTTCCTCTTCCTCTTCCTCTTCCTCGATGGATGA GGAATCATCTTTCTTCATCATCATCATCATCATCATCATCATCATCGTCTCCTCTCTCTCTCTCTCTCTCTCTTTCCAGCTCGATCGAAACCCTAGCAATCCCAATTTCGATTCCTCAGATCGAAATTTCATCGATTTAGTGTTTTTTTTTTTGTTGGGAAAGAAGCTAAGAGAGAAAAAAAAAATGTCAACGGAGAATAATACCTCATCGCTGCCACCACCACTGTCATCAGACGCCATCGATCCAGCGCCTCTGCTTCTGAGCGGCGACGAGAACGAGGGAAGCAGCAGCAACGGAGGAGAACAACGGAGAACCTCCGTGAGGAGACCGGGGCTGAGGGAAGCCGCGAGGCTGCTGAGCCGCGCGAGCAGCGGCGGAGGGCGCGCGATGCGGGAGTCGTCTATGGTGGTGAGGGAGGCGGCGGCGGAGCAGCTCGAGGAGAGGCAGAGCGATTGGGCCTACTCGAAGCCCATCGTGGTGCTGGACATCGTGTGGAACCTGGCGTTTGTCTCGGTGGCTGGGGCTATTCTGGTGATGGCGAGGAACGAGCATCCCATCATGCCGCTTAGGGTTTGGCTCTTGGGGTATGCGTTGCAGTGTGTGTTGCATATGGTTTGTGTGTTGGTTGAGTATCGGACGAGGAACAGGGTGAGGAATAATAGGACTCCGAGATCACCTTCTTCTTCTTCCTCTTCCTCTTCCTCTTCCTCGATGGATGAAGATGCTTTGGGTTCGAGGAGGAATTCACATGAGGAGGTCTTGTCTCTCGGGCAGATTGAGAACGAACGCAGCAGTGTTGCAAAGCATCTAGAGTCTGCCAACACAATGTTCTCATTCATTTGGTGGATCATTGGGTCA 4 0 3' arm Brassica_oleracea mirnest 100 100 -30.2 ..(((((.....(((.((((((.((((.((((((.((.((((..............)))).)).)))))).)))).)))))).))))))))...... (-30.2)