mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCTCTTCCTCTTCTTCTTCCT TGGAGTAAGAAGAGGAAGAAGAT TCCTTCCACTTCCTCTTCCTCTTCTTCTTCCTTCCTCCGCCGCCAATGTCCACGTCGGAGGAAGTGGAGTAAGAAGAGGAAGAAGATGTCGAATT TGCTGCTGATTGTTGTTGTTATTAACCTGCGGTTGCGGTTGCGGTGGCACGGTAGGTTTCTCCGAAAACTTGTGGAGAAATGCCATGACCGCGGAGTCTTTCGCCGCGGACATGGAGCGTTCTTGAGCCAAGATCTCGCGTTCGCGGTTGATCCTCGCGATCTCTTGAGCTCTCCAAGACTCTTCTCTAACCAATCTCTCGCGCTCGCGCTTGTCAACAGCTTCCAAGAACTGACGCTGAAGCTCCTCTTGCTTATCAACGACCTGTTTCATAAGCCTCTCGAAAAACTCCTTCCACTTCCTCTTCCTCTTCTTCTTCCTTCCTCCGCCGCCAATGTCCACGTCGGAGGAAGTGGAGTAAGAAGAGGAAGAAGATGTCGAATTATCCGAGGGGAAGTCTCCGGAGATGTTTGGAAACGAAGGTGTAGTTGTCGGGGGGATAATAGTTGTTGTTACCGGAGGAGGAGTGGAGAACATGGAGCTGTTGTTGTTGTGAGGTCGTAGAGGCGGTTGCGTTTGCGGTTGAGGTGGTTGGTGTTGTTGATGATGATGAGTCTCGAGAGCTTCTAACTGATCAAAGAAGCGATAAGTTTTGCCTTCGGGTTTACCGGTACGACCTTCTTTGGTTCGTTTGTGGTATTTGTAAACATTTTCGAATTTCTCTTTGCATTTCTTTGCGTTTCTTATGTAACCAAGTTCCCCCATTTTCCTGAAAAATAAAATAAAATCACAATTAAC 1 2 5' arm Brassica_oleracea mirnest 100 100 -42.8 ...(((.((.((.((((((((((((((((((((((((((.((..........)).))))))))).)))).))))))))))))).)).)).))).. (-42.8)