mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CGGAATATACCGACGGAATTC AGTCCGTCGGAATATTCCGAG AGGAATTTCCTCGGAATATACCGACGGAATTCCGAGGAAACTACAGTCCGTCGGAATATTCCGAGGAAATTCC GAATCACACACACGCACACACTAAGATAAATACTTACCTTCTCTTATCCGGCAGCTTACACATCCTCTTTACTTACTAGGGTTTCAGATAACAAATCAAGCAAGATCGTCGTCCGTACTTACTGATCATACACAAAAAAAAATCAAAGTTGTCTATCAAGAACTTAGAATTATCAATATATATAGAGAGAGATGTTTCGTTTTCCAGTGAGTCTTGGAGGTCAATGTGACAATTTGAAGCAGACACAACCATCGGATGAGCAGCATCATCGGCCAATAATGGATGAGGTTGACTTTTTCAGGTCGGAGAAGAGAGATGATCAGAATGTCATCACCGAGGAAACTCATAGGCTTCATGTCAAAAGGGAAAATTCACGTGTTGACGATGATGATGATCGTTCCATGGGTATCAATGTAAGTATTTTTCTTACCATCCTATAAGTTTTTTTTCCAGTGTTTAGCAATTATATTATAAACACTACAAGAAAACAGCGATATTCTGACGGACATTCCGACGGAAAATGAAATCCTCGGAATATACCGAGGAATTTCCTCGGAATATACCGACGGAATTCCGAGGAAACTACAGTCCGTCGGAATATTCCGAGGAAATTCCGAGGAAAACTCTGTTCCTCGGAAAAAAACCGATGAATTCCGAGGAAATATTATAGCCGTTGGAGAGCCGTTGGGGGATTTTACAAAATTCCGAGGAAATTCCGACGAACTAGTTTTGTCCGTCGGAATTCCGTCGGAATTTCCTCGGTATGTCGGCAGGATTTAAACTATAAATACAAGCACTCCTCTTCCTCTTCATTCACTTCATAT 5 0 5' arm Brassica_oleracea mirnest 100 100 -43.5 .((((((((((((((((((.((((((((......((....))....)))))))).)))))))))))))))))) (-43.5)