mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATCGTCATCATCATCATCT TTGTGATAGTTGCGATTATG TCGTTGGCGCACTTGTGATAGTTGCGATTATGTTGATGACTTTATTAACCTCATTGAGTGTAATGCTACAATCATGTAAAAGTAGAGAAGCCGGAGTTCTTGAAAACGATCATCATCATCATCATCATCGTCATCATCATCATCTGCATCAGCG CGCGGGGTTATTTGGGAGATTATGGAGCGCGAATATTCTGCACCAAGTGTCTCGAGTGATGAGGGATCCGATACAGGAAGCCAATATAGAATGGAATCAGTGGTGTATATGTCGTCGTGTGCTGCGACTGTCTTCGTTGGCGCACTTGTGATAGTTGCGATTATGTTGATGACTTTATTAACCTCATTGAGTGTAATGCTACAATCATGTAAAAGTAGAGAAGCCGGAGTTCTTGAAAACGATCATCATCATCATCATCATCGTCATCATCATCATCTGCATCAGCGGCAGCAGCATCGTTATGATTATGATTATTGCAAAATGGCTGCTTTAAACGCGGAGATTAGCAGCTTTGACGCGTATACTTTGCCTGAATTTTGCAAGGATGCAGCTGTTAAGTACATAAAAGAAGGTCATTACATGAGAGAATTAAACGATTCGGTTTCTCTAGTTGAGAATTACTTTCATGGGGTCGTGCTGCATGATGGTGGTCATGATGTCGTGTTGATGGACATAGATGACTTCCTTCCCGACAACGCTTTGCGTACCAACCCGATGCTATACGGGTACAATCGATACGGGTGTGATGATTGTGTTAGAGAAGCAAAGCGTATGAAACATGTTTTCTTGATCGAATTGTACGCAAAACTTGAATCTGGTGGATGGCCTTTGATTTTGTTATCGAGGAAGCCTGAACAGCTACGCGATGCTACCGTTGATGACCTTAAATCGTCTGGATGTCGTGGGTGGTTAAAAATAATCATGAGATCGGACGAGGGTATGAAAACAGATACTCGCGATTACTTTCTAAAACAGA 5 1 3' arm Helianthus_paradoxus mirnest 100 100 -33.6 .((((((.(((..((((((.((.(((((.(((.((((((((((.(((.......(((.((((....)))).)))........))).))))...((..((........))...)).)))))).))).))))).)).)))).))..))).)))))) (-33.6)