mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TAAAGCTAGATAACCGAAAGT CTTTGGTTATCTAGCTGTATG TAGGTGGTATCTTTGGTTATCTAGCTGTATGAGTGTGTCTGGCCGTCATAAAGCTAGATAACCGAAAGTACCAACG GGCCGGGTGTTACACAGACGGGGCTGCTACACGGGGCTGTTACACAGACGGGGCTGCTACATGGGGGCTGCTACACGGACGGGGGCTACGACACAAGGCTACTACTAGAAGGAGCCGGCGCGGTACGCTGCAGGAGGTTTCTAGTAGGTGGTATCTTTGGTTATCTAGCTGTATGAGTGTGTCTGGCCGTCATAAAGCTAGATAACCGAAAGTACCAACGACTTCCATAACCGCCAACCACAAGAGCAGCACCATCAGCAGCAACATCGGCAACATCATCATCATCATCAGGAGCAGCAGCACGAACAACGTCGCAAGGACTATCTTTGTTCGCGGATGCGTGCGTTGACTCGTATGCGTCCCTGTGTGTCTGCGTGTGCGTGCGTGTGTGTACCCGCGCGTCGGTCACAAGGAAGGCTGCATTGTGGCTTATATACTCGCCAATTTGTGTGCACGTGCAACGATGCGAGCGCCACCGTGCTCCGATGCGCGCGCCA 2 0 3' arm Petromyzon_marinus mirnest mir-9 5e-18 pma-mir-9a-2 8e-38 -34 ....((((((.(((((((((((((((.(((((..((.....))..))))).))))))))))))))).))))))... (-34)