mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GATGATGCTGCTGATGATGAT TGTGGACCGGCAGCGTCGCCGG GATGATGATGATGCTGCTGATGATGATGCTGCTGCTGCTGATGAAGATGCCGCTGTTGTGGAAGCGCCGCACCTCGCGGGAGGAGGACGGCGACGATGGGTACGGAGAAAAGGTGAAGAGGGAGGTGACGGGGAGGCTACGAGGAGCGGGAGATGACGTCGGTGGGAGTGATTGTGGACCGGCAGCGTCGCCGGAA CGAGTGGGGATCCTGACCCCTCGACCACCGACGCGACCGTCGCCAGCAACATCACGCAAGAGGACGAAAATGATGTTCGTGTAGACAACGAGGGTGCTGCTGCTGATGCTGCTGCTACTGCTGACGATCATGATGATGATGATGATGCTGCTGCTGATGATGGCGATCATGATGATGATGATGCTGCTGATGATGATGCTGCTGCTGCTGATGAAGATGCCGCTGTTGTGGAAGCGCCGCACCTCGCGGGAGGAGGACGGCGACGATGGGTACGGAGAAAAGGTGAAGAGGGAGGTGACGGGGAGGCTACGAGGAGCGGGAGATGACGTCGGTGGGAGTGATTGTGGACCGGCAGCGTCGCCGGAAGATGTAAAGATCAGCGTGGATGAGGTAACCAAGGTGGATGAGGAGGAGGAAGAGGAGGATGAGGAGGAGGATGAGGAGGAGCAGGTGAAGAGCTCGTCGAGGGACACGAGGCTGCGGAGACGCAAGGACGAGGCGCTCTCGTTTGGCAGCGACGAGGAAACGCGCATCGAGGCGGTGGCGCCAGGCGGCCCGGTGCAGACGCTGGCGGAGCCTCCCCTCGTCCCGCCCGACCCCGGCTCGCTCCTCGGCTGCCTGCTGCGATTCACAGCCCCGGAGCAACTGACTGGGAGCAACAAGCTCCTGTGTGAGCACTGCTCACTGAGAGAAGGCAGGAAGGTGAGGGTGTACACAGAGGGGACCAAGCGGATCCTGGTCTCGTCACTGCCTCCCGTGCTCACCCTGCACCCTCAGCGCTTCCAGCAGGCTGGATTCGGGCTACAGAAAGTGAACAGACGCG 4 1 5' arm Petromyzon_marinus mirnest 100 100 -50.9 .....((.(((((((((((...(((((..((((.(((((((((......(((((.((((((...((((...((((.((.........((...((.....)).)).........))..))))..)))).........))))))..))))).......))))))))).)))))))))....))))))))))).))... (-50.9)