mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGTGTGCGTGTGCTTGTGTGT ACATACATACGCACGTACACACG TGAAAAAAGCATACATACATACGCACGTACACACGTCTCGCTCGTAGAGGGAATATATGTATATGCATACGGCTGGGTGTGCGTGTGCTTGTGTGTGCTACAGCA AGCATCAACGTCTTTTTACATCACTAATCCGAGTATCGCGGAAAAAAAAGCAGCCGCATTTTGTAAACTAAGTCCGAATTAGAGCCAATACAAGTCCCGACTTATTCGTCAAGAGGATCGGCGGTAGCAAATAGCAACAGCGACACTTGGTGCAAAATACGCCGAGGAGAAAGAAGTGAAAAAAGCATACATACATACGCACGTACACACGTCTCGCTCGTAGAGGGAATATATGTATATGCATACGGCTGGGTGTGCGTGTGCTTGTGTGTGCTACAGCAGCTTCTAGGCGTGAAAGAGCGAGGGATACATTCTCTTCCCATACTCTCGACTTTTGGAGCGTCGCGCGAGCGGGCGAGC 3 2 3' arm Drosophila_simulans mirnest 100 100 -30.7 .......((((((((((....(((((((((((..(((((.(((...))).))...(((((....))))).)))...)))))))))))..))))))))))...... (-30.7)