mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGGCAGTGTCTTAGCTGGTTG ATCAGCAAGTATACTGCCGCA GGGTGTTTCTCTGGCAGTGTCTTAGCTGGTTGTTGTGAGGAGTGAGAACGAAGCAATCAGCAAGTATACTGCCGCAGAAATTCT GGGGACATCGGGAGAGCCCGTGAACAGACTCCTGTTGATGCCAACACGTTGAGTGCACCCGCTGGAGATCACGCTGGATGGTAGACCTCGGCTGCTGCCCGGCTAACTGAGCTGCCGGCTGTTGGCAGAGCACCACGCCACCCTCGAGGCGAGGAGGGGGCTTTCAGTGTGAGGCCACTGCCTTCCAACAACCACCAACACCACCATCACCACGAAGCTGGGAATGGACAGCGTCAGCAGTGCCAGGCTCGCAGGTGGACACATGCACCAAAGACCAGTCGGGACCCCGCTGGGGAGAGCAAGCCCGGAGACGGGTGGTTGGACGCGGCTGCTGTGGGTGTTTCTCTGGCAGTGTCTTAGCTGGTTGTTGTGAGGAGTGAGAACGAAGCAATCAGCAAGTATACTGCCGCAGAAATTCTTCGCAATAAGAAGCCCCGGGATCACAGCCAAGAGGGAGGAAACTGGGAGCTGCCACTGTAAGTTTTCGA 0 2 5' arm Oreochromis_niloticus mirnest mir-34 7e-39 dre-mir-34 3e-34 -34 .((.((((((.((((((((((((.((((((((((.......((....))..))))))))))))).))))))))).)))))).)) (-34)