mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGGATTCTGTAGCTTTCAAGT ATTGAAGTCTACGAGTCAAGA AAAATCAAGGAGGGATTCTGTAGCTTTCAAGTTAAATACTTAGGGAACATTGAAGTCTACGAGTCAAGAGGAATGCA GTCAACCTAGTTTTGTCACGATATTCTCGGTTTATTGAACTTGCAAGCTAGTACAAAGCTAGTCTGATTCACTATGAAAGGCTGATTTGGCGCTGTATTTTCTTGTTTTTATCCAAGTACCGAGATTATTATCCAAAAATTAGATGGTTTATTTAGTTCAGTGTACAAACAACATCAAATTGCCAAGTCAAAAATGAATCGTTTGAGAAGAACATTCAGCTTTCGAAAACGTAAAAAGCAGAATAGGAGTGAGGCTGGTGATTCTTCAAAACCACAACAGTGGTTAGATGATGAAGTGAAAATCAAGGAGGGATTCTGTAGCTTTCAAGTTAAATACTTAGGGAACATTGAAGTCTACGAGTCAAGAGGAATGCAAGTGTGTGAAGAAGCAATTAAGGCATTAAGAAAATCAAAGAAGAAACCCCAAAAAGCCGTCTTATCTGTTAGTGGTGACGCTTTACGCGTTTCAGATGACGTTAGTCAGCACCTCATCGTCGATCAGACTATTGAAAAAGTCTCGTTCTGTGCACCTGATCGAAACCATGAAAAAGGATTTGCCTATATATGTCGCGATGGCGCTACTCGCCGTTGGATGTGTCATGCCTTTCTTGCTGTCAAGGAGTNCGGTGAACGATTGTCTCATGCAGTTGGATGTGCTTTTG 3 2 5' arm Schistosoma_japonicum mirnest 100 100 -13.6 ....((.......(((((.((((.(((((((((............))).)))))).))))))))).....))..... (-13.6)