mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TATGTGTGTGTGTATGTGTAT ACAACGAGCACCAATCATTGA CAAAAACGTGTAAACAAACCATACAACGAGCACCAATCATTGACCAATACAATACAACACTGCTACTACTGTGAGTCTTGTATGTATGTGTGTGTGTATGTGTATATTTATTTATATTATGTAG ATGCATGGTATGTTAAAATGTGATGAGGTGCATGGTGTCCACTTCTGTATACAAGGGGCTGGCTTTGGGCCCCGTTGCTGGCTGGTGTGTGTGTTATCATTATCATCATCAACATCATCGTCTTCTTCACAAAAACGTGTAAACAAACCATACAACGAGCACCAATCATTGACCAATACAATACAACACTGCTACTACTGTGAGTCTTGTATGTATGTGTGTGTGTATGTGTATATTTATTTATATTATGTAGACAAAGTGGCATTGGGCTTTACCTCTGACATTCATCGCTCTATTCCATCACAGGAGAGAAAAAGGGGAATATGGGAGGAGGGGAGACAAAAAAGGGGAGAGGGAGAGGGTCCGCGAAGAAGGGAGCGAGGGTGAGGGAAGAGGAAAGTGAATTGGGGAAGAGGGGAAATGCAGAATGCCACGGTCGCCTTGAGTCGCATGCAGGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGCGTTGCGATACTCACCAACATTAGACTGAAAAATTTTGCGAGCCCCATTTGTGGATTATTATTATTGATCGCGACTGTACGTTTGATGACTTCATACACACACACACCACTGAGGAGCCATCGTACCATCGCTACCATCGTCAACACTACAGATATATGTTCATGCATACGACGGTCAGCCTCACTGTCAGAACACATGACAGTACTGTATAGTCGGTGACAGAAGTTCGCTTCATTTCCACCTGTGTAT 4 2 3' arm Petrolisthes_cinctipes mirnest 100 100 -21.8 .......((....))....((((((....((((....(((......((((((.((.(((.((....)).)))..)).))))))..))).)))).))))))..(((((.((....))..))))). (-21.8)