mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CGCGCCGGGCCCGGGGCTTCT AAGCCCCCCTCCCCGGCGGCGCT TGTGGCGTACAGAAGCCCCCCTCCCCGGCGGCGCTCTCGGGGGACCCAAGTCCTTGTGATCGAGGCCGCAGCCCGCGGACGGTGTGAGGCCGGTAGCGGCCCCCCGGCGCGCCGGGCCCGGGGCTTCTCGGAGTCGG ANNNNTTAGTCAGCGGAGGAAAAGAAACTAACGAGGATTCCCTCCGTAACGGCGAGCGAAGAGGGAAAAGCCCAGCGCCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTACAGAAGCCCCCCTCCCCGGCGGCGCTCTCGGGGGACCCAAGTCCTTGTGATCGAGGCCGCAGCCCGCGGACGGTGTGAGGCCGGTAGCGGCCCCCCGGCGCGCCGGGCCCGGGGCTTCTCGGAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCCTGGAGGGGTATCCCAAGAGCAAGAAGCAATTCTTTGAGGAGGTTGGGATAGAGACAGATGAGGACCACGGCGTTGTGATGCCAGCGACCACATGAGGTGCTGGGAGAGCCTTTGTTCCGGGGAGAAGCTGCTGCAGAGCTGCCTCTGAAACTTGGCTGTTGGGTTGTTCTTTTTCTCTTTTTGCAGGACTGGCATTGGTCCTGTGTATTTATTTAGTTTTGTTTTAAATAAATGTTTTGTGGTTGGAAAGGTGGGTG 3 2 3' arm Taeniopygia_guttata mirnest SSU_rRNA_eukarya 3e-39 mmu-mir-5105 0.000000000000002 -59.9 ..((((....(((((((((....(((((((.((((...(((((.((...(((((((....)))))((((.....)))).((((.....))))...))))))))).)))))))))))...)))))))))....)))). (-59.9)