mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CGGGTGAGGCCGGTGGGGGGA TTTCCCCTGCTAAACCCGAC CGACTGCGTGACGGGTGAGGCCGGTGGGGGGAGCGCCCTGCCTGCGGCATGGGCCGTGTCGGTGCTGAGAAAGCCGGAGAGGCCCCGGGTGCCTTTCCGGGAAATGCCGGCCCGGCACAGCGGTGCCGGTCCCAGGCTCCCGGCGCTCTTTCCCCTGCTAAACCCGACGGCCTGAG TCGCGCTCTTCTGCGGCGATAAGGACGCCGAGGGCAGGAGCTGGTGTCCCGACTGCGTGACGGGTGAGGCCGGTGGGGGGAGCGCCCTGCCTGCGGCATGGGCCGTGTCGGTGCTGAGAAAGCCGGAGAGGCCCCGGGTGCCTTTCCGGGAAATGCCGGCCCGGCACAGCGGTGCCGGTCCCAGGCTCCCGGCGCTCTTTCCCCTGCTAAACCCGACGGCCTGAGCGGGCTGTGACCCGCAGCTGCCGCACTGCCCGTTTCGCTGCCCACATCGAGCGGCACGGGCATGGCCCGGCACGGCACGGGCACGGCACGGGCACAGGCTGTTGGCGAAGGCTCGTTCGGCCCAGCAGACAAACAGCCGTGAGTCCTGCGGTCAGTTTCTCTCGTGCTGCACATGTGCCCTCCCGACGCTGTCCGGCGGCACATTCGCATTCCCTTCTCAGTACTCAGCGCGCTGAGCTGCCTGGGCTGCACGTGCCTGAGCAGGTATGAAGGTGCCTTATGGAACCCTCACCCTGCAGAAGGGCGCTGCGCCGGGCTGCCACACCCGGGACATGACAGAACGACTGTTTCTCTTGTCTTAGAGAAGAAATTGGCCTTTACTCCAACACAAGTCCAGTCAGCGTTCAAGCATGTAATAAACTCTGAAAAACTTGTGGATAGCCAGGTGCAACAAAATACAGATCTCTTAACTAAAGCAGACAGAACATTAATTAGCAGCCTTGCTGGTCCAAGTAAATCCATGTGATTCTGTAGCACGAGTACTTAGTACTAACATATTTTTAAAAT 3 1 5' arm Taeniopygia_guttata mirnest 100 100 -83.5 .....((.((.(((((..(((.((.((((((((((((..(((((((((((..((.(((((((.((((......((((((((((.......)))))))))).......))))))))))).)).))))))....)))))....)))))))))))))).)))..))))).))))..... (-83.5)