mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TAAAGCTAGATAACCGAAAGT CTTTGGTTATCTAGCTGTATG CGACGGAGGGATGTTTCTGTCTTTGGTTATCTAGCTGTATGAGTGTTGGGGAGCCATCATAAAGCTAGATAACCGAAAGTAGAAATGACTTCCAGAC NNAAGGTGATGCATCGCGACTGATTCGCGAGCTCTACCGGTGACACACTAGAACCAGGTGGAAATCCGTGCCCAGCACTGCTCTTTCAGCTTCTTTTTCTCCTGAAATAACCCTTCCGAGAAGCTCGTACCCCCCTATTCCAGCTCGCAACCCCTTTTTCAGGCTGGGGAGGAGTCGGGAAAGAGGGAAGGAAAAGAGACAAGAAAAGGACCCCAACATGCCGCTCTTCCCCTGCTCGGGAAGCGAGCCCCGGAGCTCCCAAAGTGAGCGCTGAAGAGGGCGACAGGAGACAGGCAGGAGCCGGCTCCGAGCTGGAGGGGTCGGGGGTGGGATGAGAGCAGAGGAGGACCCTCCTTTTCGGGATTAAGGGAGAACCAGCGAAGGAGGGAAGCTGGCGGCACCGCGGGCATCCGAGCTCCTGGCCGCCCTGCCCCGGCCGTGCCCGCACCTTGGAGCGGACGGACGGACGGACGGATGGCCGGCATCCCCGACGGAGGGATGTTTCTGTCTTTGGTTATCTAGCTGTATGAGTGTTGGGGAGCCATCATAAAGCTAGATAACCGAAAGTAGAAATGACTTCCAGACCTGCTCGCCCAGGGGAAGCGGCCGCACCGGGACCGGCAGTGCAGAGACGGCCCGACTCGCCGCCCTGGGGGCTC 2 0 3' arm Taeniopygia_guttata mirnest mir-9 0.000000000000002 tgu-mir-9-1 2e-33 -39.9 ....(((((..(((((((((.(((((((((((((((.(((((..(((....)))..))))).))))))))))))))).))))))))).))))).... (-39.9)