mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTGGTTTGTTTTTTGTTTTTT AGGTGGGAGGACGAGCCGAGA GTTTTTTTTTTTTGGTTTGTTTTTTGTTTTTTTCCTCCTCTGCAGCCTCAGCGATTTAAGGTGGATTGCCCAGCTCTCATGGAAGAGGTGGGAGGACGAGCCGAGAGAGCCGAA GCCGCTCGCATTTTTTTTTTTTTTTTTTCCACGTTTCACTGCTACTACGAGCGGGCGCCTGCCTCTGTCCCGATTTGCTGCAGCCATCGGGGGTGCTGACTGTAAACAAAACACTTTAGATCATGGCAAGGTCGCTGCAGACACAGCCTTCTTTTCTTTTCCTTTTTTTTTTTTTTTTGGGTGTTTTTTGTTTGGTTTTTTTTTTTTGGTTTGTTTTTTGTTTTTTTCCTCCTCTGCAGCCTCAGCGATTTAAGGTGGATTGCCCAGCTCTCATGGAAGAGGTGGGAGGACGAGCCGAGAGAGCCGAAAGAACGGCGGGAACCAACCCCGATCCCAGAGCACGGCCGCGGATGCTCCGGGGATGCGGATGCTCCCGCCCCGGGGGAGATACTCTGATTTTTTTTTTTTTTCCCCTTAATTTTACCCTCTTTCTTGTTGATTTGTCCCAGCGCGACCCTAACGTTTCCGGCGGCACGGGCTGAGGGTTGTGCTGTCCCCAAAAAGACGCGCAGCTACCGCAGCTTCGGGGTACACCCTCTCCCC 2 0 5' arm Taeniopygia_guttata mirnest 100 100 -30.4 ......(((((((((((((((((((..((((((((........(((....(((((((.....)))))))...))).....))))))))..)))))))))))))))))))..... (-30.4)