mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGGAATCATTTCTGCACAAAC GTGTGCGGAAATGCTTCTGCT AAAGGTACCCTATGAATCTAGTGGAATCATTTCTGCACAAACTTGACTACTGAAATCAGTGTGCGGAAATGCTTCTGCTACATTTTTAGGGTCTCCC TGTGTTGGGAAATCTGATGTCATCATTCACAAGATTGGCAGTTCAGAACCATGGGAAACTATTGATCCTGCCAAACCTCAGAAGCTGGTAACAATCAATCAGCAGTGGCAACCTATAGAAGAGCTGGAAAAGGTCAAAAAGCTTACGAAGTGAGAAGTTTCTGTTGCCTGAAAAAGGTACCCTATGAATCTAGTGGAATCATTTCTGCACAAACTTGACTACTGAAATCAGTGTGCGGAAATGCTTCTGCTACATTTTTAGGGTCTCCCTACATTTTTTTTAGACTCTGGATGAGGAGTTTCATGTTGCTTTAGAAGCTGGCATACAGCATCCACATAGTCCAAAAATCTGAATCAAAACATTAATTTTCAATAAGCATTTGATGAAAATTTTTGAGTATTCAGATGGTAATTATGGATCAAAAATGCCTTCATAGTTTTTGTAGAATTTCAGGATTTTTTCAAAATACATTAGTTTTGACATTTTACTCATTTTTAATAAAATAAAATCAAAATTTATACATTTACTGTAAATTCAAAAACCCTTCTAAATTGGGATTCCTGGTCTCCTTCCTTTCTGTTCTGTATTTCAGTGTTATATAGAGACCAAAGTCATAGCCAGAGGATGTCTTTGTACGGCAGCATATGTGGTCATACAGTACACTTGCATTCCTCGTCTGTGTTAGATGTGGGGACAGATTAAGTCAAAACTAATGTTGTGCTGCAAATACTGAAACTTAGCCACTGAGGAGTCCAATAGGCTATTTAAGACAGCGTATTTAGAACCTCAAAACCTA 4 0 5' arm Taeniopygia_guttata mirnest mir-147 2e-30 tgu-mir-147 4e-34 -39 ...((.((((((.((((.((((((((.((((((((((((...((((.........)))))))))))))))).)))))))).)))).))))))..)). (-39)