mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ATTTCTTCATCATCATCGTCA ACGATAGTGAAAGGACCTG TTTATATCCAGATTTCTTCATCATCATCGTCATCGCCTGCAACTAAACCACAACCGATCAACATTCTTTCTTTCTTACTCCATGACGATAGTGAAAGGACCTGCTTCGAAC CGGGGGATCACTTCTTCTTTCTCAGGGAAACAAACAAACTAACTTCTCAGGGAAGGAAAAGAGTGTTCCCCCTTTCTTCATAATCAAACAACCTACACTACTAGTACTACAACTTTCTTCTCATTTATATCCAGATTTCTTCATCATCATCGTCATCGCCTGCAACTAAACCACAACCGATCAACATTCTTTCTTTCTTACTCCATGACGATAGTGAAAGGACCTGCTTCGAACCTAAATCTTTCCGAAGCTGACGATAAGAACTTGGAGTTTTTGATAGAAGCTTTCGGTTCAATGATATCTCCCGATGACATGGCGTCCGCGTACTGCCAAGCGGGATACGATCTAAATAAAGCAAGTGATATACTATATGCTATGCTCGGAAGCTCTTCCAACAACGACAAATACATACCAACAGAAGATTCGACTAGAGCACCTGCATCATCAGTCGGTGTAACCGTCGGTACAGTTTCTGGTGTTAACGGTGCTTACTATCCAACATCAAGAACTTCAACCAACGAACCTGCAACGGTTCTTTCTAGAGCTAAGCCCAGAACCTCTGGTGTATCGGTGGGTACGGTATCGGGTATAATCGGTGCTGATTATGGGAGGTATAGGGCTAATACTAGAAGAAACTGTGAAACTACGAAACCGGTGAAGTTGATGTCGAATGAGTTTCCTGAATCTCAGATATGGGATGAGAAACCGCAGTCGGTAAATAATGCACCGACTGAAACTATGAACAGTGATATCGAGATGTTTTTGCTTCAGATGCTTGGAGATGGTTTTC 3 2 5' arm Helianthus_tuberosus mirnest 100 ath-MIR414 0.0003 -13.493 ........(((..(((((..((((.((((((((................................................)))))))).))))))))).)))........ (-13.493)