mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATCGTCGTCGTCATCGTCT ACGATGAAGAATACGAAGAGG CAAGAAGTTGATTTGTTTGGGGACGATGAAGAATACGAAGAGGATAATCAAGAAAACAATAATAATACTAATAATGGTGGCCGTAGATCATCACCATCATCATCGTCGTCGTCATCGTCTTCATCATCGTCAGGTTCAT AGAAAAAGTAACAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAATTGAAAGAGGAAAAATGGATTTCGCAAAACAAGAAGTTGATTTGTTTGGGGACGATGAAGAATACGAAGAGGATAATCAAGAAAACAATAATAATACTAATAATGGTGGCCGTAGATCATCACCATCATCATCGTCGTCGTCATCGTCTTCATCATCGTCAGGTTCATCATCTTCGTCAGCCGCATCATCTTCATCAAATAGTAGTGATGATGGTGGAGATAGTAGCAGTGCCGAGGGTGAAGGTGGCAGCGCCAGCAGTGGTGGAGAAGAAGAGGAAGAAGAAGTAAATAATAATAAGAAGAATAATAATAGCAATAATTATAATGAAGTGGGTTATAATGAGTTTGACGACAGAGACCTTTTTGGTTCTGATAATGAAAATTATGTTAAAACTCCCGCCATCAGCCGTTTCTCTATTCCTGTGTTGCCAGTCATACGGAATGTCCACAACCCAGGCAAAGGAAACTTTGGGCGTGGCCGTTGGCAAAATGATAGAGGAGCTGGCCTCCTTCCCCGACCTGGATTTCCTCCACGACAGGGCTATGGCTATGGTTCAAAATTTTCAAATGGTCACCGTGATGAACGATTTGTTTCTGAACTGAAGTTCTTAAAAAGTGAAGAAACTTTGTCAAGAAAAGCAGTTGCATTTCAGGCGCCATGTGAACTTGGTTGCTATAGTCGCGCAGAAGGTGGAGAAGTCTACTTTGATGATCGCACCTTGAGGCTTTTTAAGCGTTATATTTCAGAGATATTGGAGCTGATCTGA 4 0 3' arm Ricinus_communis mirnest mir-598 1e-35 100 -35.5 ...(((.(((((.((..((((((((((((.((..((((.((.((..............................((((((..........)))))))).)).))))..)).)))))))))))).))..))))).))).. (-35.5)