mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GATCATGCGATCTCTTCGGAA CCAAGGGATCGCATTGATCCA CGGGTTGAGCTTCCAAGGGATCGCATTGATCCATCTGTCCACTCGGATTTCAATCTCAGTTGATAATTTGGATCATGCGATCTCTTCGGAAGCTTCCTCC CGGGGGCGCGGGTTGAGCTTCCAAGGGATCGCATTGATCCATCTGTCCACTCGGATTTCAATCTCAGTTGATAATTTGGATCATGCGATCTCTTCGGAAGCTTCCTCCATCGCGCTGCATGTTTACATCAATCCATCCATCTTCAACTCATTCAAAGGGGCGGACCTGAAGGCAAGTCGGGCGGAGCCCGGGCTACGGCTCAACTTTTTACTAGAAGTGTAAAAAAATTTTTTTTTTTCGATTTTTATACATAGGACACCCCTGAACAAGTACGAGGACACCCCTCAAGCTATGAAAAAAAAGAAGAGGACAAATCTATTAGAAAAGGACAAAGATGAATGAGAACATGAGCTCGGGCTAAGTAGCACCTGGACCCATAATGCCTGCAAAACTTATGGTTGATGGTCTCCAATTTGGAACAAAATTATGAGCCTAGAGAAACAACCGGAATAGAAGGTATCGCGAGGGGTAGAGTAGACGAGTACTAAGTTCGTGAGCAGTGAAGACGATTTTGCAATGATTGAAATCCTTAATCTCTACACATCCTTAAGTACAAGGGTTATTGTGTATATAGTTAATAGTTATTTAGATGGCGGTTACAAAGTACAAGGTCTGAAGTTGTCAAAAGAAAACATTGTAACTACCCTCCTAAAATCGAAGGGGTGTGTCTCTCCTACACCACACACCGATCGGCCAAAGGAGAAAAAGAAAGGGTGGCACCGGTTCAAGTTTGTGGCTACAAATCAACGTACCCCTTCACGATCAATCTCATCCACATATTCAAGGGACACGTCTATTCACGAAGAGACACGTCTATTAGTCGCACCCGTTGGAAAACTATAAATAGGGGTCAATAGAATTCATTTGCACATAATACTCTCATTCGAAATCAGTTGTACATATACACACATTCAGAATGTATTTCGATTTATTCAAAATATACCAAGTTGGTTTATC 0 2 3' arm Helianthus_tuberosus mirnest 100 zma-MIR393b 0.00007 -46.1 .(((..((((((((((((((((((((.((((((..((((.(((.((((....)))).))).))))...)))))))))))))))))).))))))))))).. (-46.1)