mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATCATCATCTTCATCTTCA TGGAGGAGGACGGTGAAGATT CAAAACCCTCATCATCATCATCTTCATCTTCATCTTCATCGTCGATTGCGTTTGGAGGCGGGGAGAGAAATTCAAGATCGATTCGGATGTAGAAGAAGTGATGATCAGATGTGGAGGAGGACGGTGAAGATTGGAGGAGT ACAAAAGAGATGAATTCGATCTATCCGTGAACTAAATCTATGTATGTATATATGAATTGAAGATCGAGTATACGTACTATTTAGAAGTTAAAAGCTCCAAACACCAAAATTCAAATACAAAACAAAAACAACTAACATTAGCCTAATTCTCTGATCTAGGATCTATGCGTTGGTTTGTTGTTGATGATCCTCCAGAGAGTCCACCAACACGCTAGCGGAGACAATCATGCCTAGAATCTTCTCCTTCTCGTTGTGGGCTGCATTCGCGATTTCATCGGCGCATTCTGAGATTTTCTGCACCAAGAACGGTTGCCCGTCCGCCGGGATCCCCATCCCGGAAAGCATGCCGGAGACGAAGCCGCGGGGGATTTTCTCATCAGGGTTTAGGCGGCGGCACGGTGCCCAGAAGTGCTCCGTTTTGGTGATGCTCTCGAAGCAGTCGGGGTCAAAACCCTCATCATCATCATCTTCATCTTCATCTTCATCGTCGATTGCGTTTGGAGGCGGGGAGAGAAATTCAAGATCGATTCGGATGTAGAAGAAGTGATGATCAGATGTGGAGGAGGACGGTGAAGATTGGAGGAGTTCCGGTGTAAGAAGATGCGGAGCCTCCCATACGTCGCAGTAGCAGTCATCGATTGGGGTCATCGTCTCACACTCCATTCTCTCTCTCTGTGGAAGAATTGAATCAAGAAAACGAGAAATTCTTTTC 4 0 5' arm Ipomoea_nil mirnest 100 100 -46.1 ......(((((((.(((((.(((((.(((.((((((((((.((..(((((((((((..(((.(((.....)))....))).)))))))))))..))...)))))..))))).))).))))).))))).)))..))))... (-46.1)