mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCACTTTGTAGTCCAGGCTGG TGCCTGGCCCTGGAGTGTTC TGTCCCGGAATTCACTTTGTAGTCCAGGCTGGCCTCAAATTCACAGAGATCTGCCTGGCCCTGGAGTGTTCTTAAAGGC GCTTTTTTATATTATTATTTATTATATTATAGAGTTGGGGGGGGCATGTATATAAAAGTCAGAAACAATGCCAAGGAGGTAGTTTTCTTTTCCACCATGTGGGTTCCAGGAATCAACTCAGGGTTTCAGGTTCGGGGGTAAGTGCTTTTACCAGCTGAGCAACTTTACTGGCACAGAAATGGACCATTTTCTAAGAAAAATCTCCAAAATTGATACAAAAGGAGACAAAGCAATTGACTAATATAATAACAACAAAGAACAGTATAATTCAAGGAAAAGGAATCTTACATACTATTCATTCAACCTAGGGAGTAAAGACAATTTCTACAACTTTCTCCCCAAATCTAGAATAAAATAAACAACTACACAGTTTATTTTATGATGTATTTCAAAACTGCACTACAGTAGAAGAATGCTGCAAGACAGGGTCTTGCTACTGTACAATCCAGGATGGTTTCAACTCTTCCCTCCCTCCCTCAGCCTCCAATATAATAGGATTACAGATGTGTGCTACAAAACAACAGCTGACTAGAAACTCAGTTATTATTTATTTATGGTTTTTTGAGACAGGTGTCTCTGTGTAACAGCCCTAGCTGTCCCGGAATTCACTTTGTAGTCCAGGCTGGCCTCAAATTCACAGAGATCTGCCTGGCCCTGGAGTGTTCTTAAAGGCATGCGCCACCACACCTGGCTTAAAAACTAAAATTTAAAAAAAAAAAATTTGCATAAGCTATTTTTTTAAGAATAAA 4 1 5' arm Peromyscus_maniculatus_bairdii mirnest 100 mmu-mir-3470a 0.000000000001 -20.5 ......((((..(((((((..(.((((((.((.(((.........))).)).)))))))..)))))))))))....... (-20.5)