mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CACACACACACATACACACGC GTTGTGTATGTGTGTGTGTGAC TCCACACTCAACACACACACACATACACACGCCAGCGCGCCTTTGTCTTTTCATGCCATCTGCTACATGTTGTGTATGTGTGTGTGTGACTTGCCACA AAAAATCGCCGAGGTGGAGTCCGTGCGCGCCACGCTCACCGAGCGCCTGGAGACCCTGAGGGCGGCGGCGGCCCCTCACGTGGAGGAGTACAAACAGCAGATGATGCAGCTCTACAACCAGGCGCATGGCGTCAACGCCGAGGAGCTCACCGCCCTGAAGGAGAAGCTGGCTCCGCTGGCAGAGGACATTAGGGCCAAGCTCGCCGCCATGGTCGGCGTCATCACCGAAACCTTCAACAAAAACTAAATCCTCTCTTTCCCTCCCTTTAACTAACCTCGCCTTCCAGGCTGATCCATCTAAGCTGTCTCTTATGCTCTTTCTACCCCCTCCCCACCCCCCGCCTCCCTCCCACAAACAGACCACCTCAGAAGTGAAGCTGGTGCCTAACTTATGAACGAACATGGCGGAACTTCCTCTCCTCCGAGCACACACGCAAGCACGCGCACAGAGGCACATCCACACTCAACACACACACACATACACACGCCAGCGCGCCTTTGTCTTTTCATGCCATCTGCTACATGTTGTGTATGTGTGTGTGTGACTTGCCACACGGGCTTGAATCTCTGTGTTGCCGTGGCACTGTGCTTTGATGACTAAACTACAGCTCACTACACATCTGACTGTTGATGACTAAAAAAAATAACTCGAGATATCACTGACGTTCAGTGATTTCCGAGCATTTAATCCGCGGCCGAG 1 1 5' arm Fundulus_heteroclitus mirnest 100 100 -31.3 ...........((((((((((((((((((((..((((.((...((......)).))....))))...)).)))))))))))))))))).......... (-31.3)