mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CACACACACACATACACACGC GTTGTGTATGATTGTGTGTGAA TCCACACTCAACACACACACACATACACACGCCAGCGCGCCCTTGTCTTTTCATGCCATCTGCTAACATGTTGTGTATGATTGTGTGTGAATTGCACAC AGGAATCGGGCCGAGGCTCGTGCGAATTCGGCACGAGGACGTGGAGGAGACAAAAGCGGCCCTCATGCCCATCGTGGAGTCCGTGCGCGCCAAGCTCACCGAGCGCCTGGAGACCCTGAGGGCGGCGGCGGCCCCTCACGTGGAGGAGTACAAACAGCAGATGATGCAGCTCTACAACCAGGCGCAGGGCGTCAACGCCGAGGAGCTCACCGCCCTGAAGGAGAAGCTGGCTCCGCTGGCAGAGGACATTAGGGCCAAGCTCGCCGCCATGGTCGGCGTCATCACCGAAACCTTCAACAAAAACTAAATCCTCTCTTTCCCTCCCTTTAACTAACCTCGCCTTCCAGGCTGATCCATCTAAGCTGTCTCTTATGCTCTTTCTACCCCCTCCCCACCCCCCGCCTCCCTCCCACAAACAGACCACCTCAGAAGTGAAGCTGGTGCCTAACTTATGAACGAACATGGCGGAACTTCCTCTCCTCCGAGCACACACGCAAGCACGCGCACAGAGGCACATCCACACTCAACACACACACACATACACACGCCAGCGCGCCCTTGTCTTTTCATGCCATCTGCTAACATGTTGTGTATGATTGTGTGTGAATTGCACACGGGCTTGAATCTCTGTGTATAATGATACTGTGCTTTGATGAAAAAAATACAGCTCATAACATCTGACTGTTATAAAACAAAAAAATATAGATATAAAAAAACCCGAGAATTTCTCGTCGCTCTTATACTCCTTTCCCTCACA 3 1 5' arm Fundulus_heteroclitus mirnest 100 100 -22.2 ...........((((((((..((((((((((..((((.((...((......)).))....))))....)).))))))))..)))))))).......... (-22.2)