mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TAGCACCATTTGAAATCGGT CGTTTTCCTCTGGTGTTCAGA TCCCCCTCTCACCAAGGCTGACCGTTTTCCTCTGGTGTTCAGAGTTTCCATCGTGTCTAGCACCATTTGAAATCGGTTACAATGTGGAGGGACTGT GATGACAGTGACGTGTCCAGTGAGACTCCAGTGATCAGAAGAAAAGAAAGATAAGTCCAGCGTCCCTGATCCCCCTCTCACCAAGGCTGACCGTTTTCCTCTGGTGTTCAGAGTTTCCATCGTGTCTAGCACCATTTGAAATCGGTTACAATGTGGAGGGACTGTCAACAATACAGCTTTTTACCTCAACAGTGGCATGGTGACGTTCCTTAAAAGCACCAGAAGATGGCAGCATTGACCTGCTGTCCACGCTCTCATCCGAGACCACAGACAAGTTCTTTTTCAGAAGCACAGAGGCAGTGACGATTTAACTGATGACCCTGATCAGGTTCAAGAACAACCAAACAATTCCCTTCTGTTTGACTGTCTGCATGTTTTAAGATTACAGTCTCTGCTCCGACAATCAGCCCCTGTCGCCCCGGCCACAGTTATCTCGTCCTGTTCTCTCTTCAAGGAAAGAGATTGTCTGGTTTGATGCTTCAGTGGGTCAGAGGTTGTGTAGCAGACACAATTGTGTGATTTTCTTCCTTGTATTCAAACACAAATTCTTACCTCGCGCATGTTGTCCATACTTGATTTACATGAATAAAGCAAAACTGGTTTCAGTTGTATCGCATTTCATTTATTAAACGATCTCCG 4 1 3' arm Sparus_aurata mirnest mir-29 4e-19 dre-mir-29a-2 0.000000001 -26.6 ...(((((.(((......((((((.((((...(((((((.(((............))))))))))...)))).))))))....))))))))..... (-26.6)