mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTTTTCTTGTTTTTTGTTTTT GGACTAATGACGACAAAAAAT TTGTCTTTTTTTTTTCTTGTTTTTTGTTTTTCTCTTGTCTACTGGGACTATTTTGGACTAATGACGACAAAAAATATGGTTT GCGGAAGAGAGGGGGAGAAAAATCCTCGGTGATTTTCTTCTAGCTGTGCTGTGTGAAATTGAGCAAGTCTTTCTGTGTCAAACTCACTCACTGTCGTCGCGACGGAGCCGAAACATGGATAGATAGTGTTTGTTTATTTGGACATTATCCATCACATCTGTGCCCATCTTGGACTGACACACAGGACTCTGACACAGAAAGACACATTTTTTTTTTTTTTGCCTCTTGTGAAACTCCACATTCCTTCCACTTTCCCTGTTGCCACCAGCATGGCCAACAGCACCGCAACAGCAGTGAAGGTTATGACCCCTGGTCCTGCTGGCAGAAGTAGTCCGGAGGGATCTCAGGTGCTCAGTAAGAAGAAGCTGCAGGATCTGGTGAGAGAAATCGATCCCAATGAGCAGCTGGATGAGGACGTTGAGGAGATGCTGCTACAAATTGCAGATGACTTTATAGAGAGTGTAGTGACGGCAGCCTGTCAACTGGCTCGCCATCGCAAGTCCAACACCTTGGAGGTGAAAGATGTTCAATTACATCTCGAGCGCCAGTGGAACATGTGGATTCCTGGTTATGGCTCGGACGAGATCCGGCCGTTCAAGAAGGCGTGCACCACAGAGGCTCACAAACAGAGAATGGCGCTGATCCGCAAGACAACCAAAAAGTAGCACGACTGTATGCTCATATGTTGTATCCACTCTCTATATTGTCTTTTTTTTTTCTTGTTTTTTGTTTTTCTCTTGTCTACTGGGACTATTTTGGACTAATGACGACAAAAAATATGGTTTGGGTGGGGGTTTTTTTTTTTTTGGACATTAGATAGTGTTTCATCGTTTTGACTCTCTAACTTTTTG 5 0 5' arm Sparus_aurata mirnest 100 100 -14.1 ....((...((((((.(((((.((.((((.......((((....))))......)))).)).))))).))))))...))... (-14.1)