mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ATTGAATGGTTTAGTGAGATC TCAAACTTGATCATTTAGAGG GCTACTACCGAATTGAATGGTTTAGTGAGATCCTTGGATTGGCCCCTTCGCGGTCGGCAACGGCCGCGGCGGCGAGCCGAGAAGACGATCAAACTTGATCATTTAGAGGAAGTAAAA TGGTACACACCGCCCGTCGCTACTACCGAATTGAATGGTTTAGTGAGATCCTTGGATTGGCCCCTTCGCGGTCGGCAACGGCCGCGGCGGCGAGCCGAGAAGACGATCAAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAATGGAAAGGAAAAGGATGGTAAAAACGTACTCAGTCTAGACAGCATCCGGAACCAGTTGCCTGATGGAAAACTGTGGATTGTTTTGAGAACTGCCGACTTAAGTCACCTTCAAGCCTTGCCGCATCTTTCAGTACTCAAGATAGCAGGCCCGCAAGTCCAATTCGTCTGCGCCAACAGTGTGACGGACGTACGTGCCAGACAGTACAAAAATATTTTCGCTGGCGAAGGGGGCATCGTCATCCCGTTTTGTCCCGGTCTGCTGTTGAACAAACCCACCCTGTTTCGCCATCTAATGATGTGGATAATTGGACAAACCGGCGATGCTCCTAAACATAGAAGGAGATGGAAAATAGGACTGCACCAGCACGTCTTGAATGCCTTGCAGAAAGCCGGGGAATCTGATGACAGTTCCGATCAGCAGGCAGCCGACCAAGTACTTGAATGGCTGTGCCATGCTGAAAA 4 0 5' arm Halocynthia_roretzi mirnest SSU_rRNA_eukarya 1e-41 100 -47.2 ..((((.((...((((((((((.(((..((((.((...(((((.((.(((((((((....))))))))).))...)))))...)).))))..))).)))))))))).)).))))... (-47.2)