mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TAACCTGAACATACTTTTTGT GCTAGGTGTGCCGCAGTGTTACT CCATGAAACGATGCTAGGTGTGCCGCAGTGTTACTGTAACCTGAACATACTTTTTGTCAATAAACA ATTACCAGGGAATAACACTATAATCTTGTGGAAAGCAGGTTTTTCGTCATTTCAAAAATACCAAGTAAAAGTTTTCTTGTTTATTGTCTGAACAAAGATAATAATAAATAAAAACTAAATTTCTTGTCTTGAATATTAAAGTACTGTGTATCGGTGTGTAAATGAAATTGAGGTTGGATGATATGTTTTTGGTACTATCTGTGAGAAGAGGTATTTCCGTTATTTGATCGGTATCGGCCAAAATTGCCAATTGATCCGTTTAGGCATTGGCTATTCTTGTTTTTTATCATTATTAATAGACCTGTATGCTAGAGCTGTGTTACGCAACCGGTGTGCCATGAAACGATGCTAGGTGTGCCGCAGTGTTACTGTAACCTGAACATACTTTTTGTCAATAAACAGAAACTTTTCAAATATGTTTACGCTCTCAATAAGCACCATCTTATAGTGAGTATAGTTAACACTAGAACCGCCNAGGTGGTCATTTTGACNGTTTGCCATTTTATATGTGAAAANTT 4 2 3' arm Halocynthia_roretzi mirnest 100 100 -13.3 .........((((..(((((((...(((.((((...)))))))..)))))))..))))........ (-13.3)