mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGCGCCGGGCTCGGGTTCAGC GGCAAGGGCTCCCCGCCGT CACACGACGCTGATCCGCGACGGCGCCGGGCTCGGGTTCAGCATAGCCGGCGGCAAGGGCTCCCCGCCGTACCGGGACGACAGCGACG ACAACCTTCCACGAATCACATAAGCACACCCGTGGGCATCACCCACACACAGACAGCACCGCGCGTGTCCGCACAGGTCGCACCCACACACACACAGTATCCACACTAGAAAATGGACAGGTTCCGACGGGTCGGGGTATACCGAACAAGCCTCTTATCATCAGCAACCAGTACGCTCAGGAGTTCGAGCCGGAGTATAAGGAGCAGGTTAACACGCCAGTGCCGACGGTGGTAACTAATGTAACGAGCTATAGTCCGTCCCCAACGGGTCAAGTTACATCGGATACCTACCAGCGGCTGCAAGCGTCGCCGCCACCTCCCTCTACTGAGCCATACATACCGCCCGTATATCAACAAAAGGTGCTAGTTCACACGACGCTGATCCGCGACGGCGCCGGGCTCGGGTTCAGCATAGCCGGCGGCAAGGGCTCCCCGCCGTACCGGGACGACAGCGACGCTATATACATCTCACGCATCTCGCCGCAAGGCGCCGCCGCTAAGGACGGCAAGATGATG 4 2 5' arm Heliothis_virescens mirnest 100 100 -33.4 ....((.(((((.((((..((((((..((((((..(((..((.......)))))..))))))..))))))..))))....))))).)) (-33.4)