mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGTGGGTTGTCTGAGGAAGAA TATCTTCAGACTGATTCACATT GAAATTTAGAATTATCTTCAGACTGATTCACATTCAATCTAGGTTATCATGTGGGTTGTCTGAGGAAGAAGAAGAAACT AGAATTTCTATCACTTACTCAGTGATGAGCTGAAGTATGAGCTTTTGATTAGGGGATATAAACATTTAAGAAAAGTTTATGAGACGAGAGCAAAGCTTGTCTCATTAACAAGAAGTTGTCATTTAGCAGTGATGATCCTGCTGAATTTAATTTAGAAGCAGAGCTAGAAGCCTGCAATAACAAATTATTATATTTAACTCAGTAGATTTCTTCGGAGTCACTGATCCTTCCTAAGAAATTTAGAATTATCTTCAGACTGATTCACATTCAATCTAGGTTATCATGTGGGTTGTCTGAGGAAGAAGAAGAAACTTCCAATAGAATTGGTTGTCTCAAGAAAGAATTTAAGAATGCTTTCAATTTATTGATTGTCTATATTACAGGGACTTGTCTCATGGAGGACACATGTGAGCCGAGGTCCGAGCCTGTGTATCAGGAGGAGTAAGGCGAGACACGTGCAGTCCCCATGTGCTGGTTATAACAGCTGCAGTGACAGGTGAGCTGCAGATTACCACAGAACCATTTTAAAAATGTCTCCAAATAGAACATTAGGTTTTCTAGTAGGGAAAGTAAACTTTTACTTCATGCTTTCTTAAAAGCCTAGAATAGAACTCGGATTT 2 1 3' arm Heliothis_virescens mirnest 100 100 -18.9 ...........((.(((((((((.(((((((((...............)))))))))))))))))).)).......... (-18.9)