mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GTTGTGTGTTTTTGTTTTCC ATACAAGAAAAACACCGCTG CAAGATTTACATCTTTCCACCAGATACAAGAAAAACACCGCTGAAAAAATGCAGCCGACACACACAATAGGACATGAATTTACATAAACTGCACCATTCAGTTGTGTGTTTTTGTTTTCCCGTTTAACTTTTCTTGTTTG GGGCAGTTATATGGCATTCTGTGTTTCTCTCCTCAAAAGTGTGCAATGGCCAACTTGCCCTCAGCGTTGTGGCTCCTCAGAAACAATGGATTTGAAATGACCTCTGGTGATATTCCAATAAACCACATCCCTCTTTTCTATAAAAATGCCACGCCCCTGTGCCACACCCTTGTCTGACCACACCCGAAGCCACGCCCAAGTCCATTGAGAGTCCACAGCAAAGAGGAGGGGATTGCTAAATGCCTATCTCGCAACAAAAAAAAGAGAGACCTGTTTCGACTACATCTACGGCTAGGAGTATACTTCATTTTTTACATACATTACACGTATACAAGGGTTGTCGCTGGAAAGTCTCGTTTTCAAGGAGGAGATATGACACAAGTGCCAAGATTTACATCTTTCCACCAGATACAAGAAAAACACCGCTGAAAAAATGCAGCCGACACACACAATAGGACATGAATTTACATAAACTGCACCATTCAGTTGTGTGTTTTTGTTTTCCCGTTTAACTTTTCTTGTTTGCAGTTGAACAACTCCTTGCCCCTGTACAATAATAAGGCACGCCAAAACGTAAAAGTGAGTGATTTCATAATTTTGGTCTTTTTTTTTCGCAGGATGCTTTATGGTCTGATCGACCGCAGTTGTGAACGGAAAACAGAAAACAGGCATATATGCTTGAAAGTCTTTACCGTATTTTTATTTTGAATGATGAAGTACCTTANAGGTTGCAGAA 4 2 3' arm Patiria_pectinifera mirnest 100 bta-mir-2390 0.0001 -23.065 .(((((....))))).......((.(((((((..((((.((((((....(((((..................................)))))...)))))).)))).)))))))..))..................... (-23.065)