mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ATTTGTGTGTGTGTGTGTGTG CACACAGCACTGTATGCACCTTC ACTATCTCGGCACACACAGCACTGTATGCACCTTCTTTTCATTTGTGTGTGTGTGTGTGTGCTGAACTTC AAGTAAATCAGTAAAACCAAAAACAATAAGCTTTATAAATACTGTACCTCAAGGTGTGGCGCAGTAAACCGTGTGATCTTGTGTACCATAACAACAGCAATGAGTTCATTTGTTTCGTAATTTGTAGCATGTAGTTCAAAGCTGGAGGATAAGGTGAAGATGGCTTCTGTCAGAATGTGCAAAGTTTCTCTGTGAGATGATTTTACACACATGCAAATCCCCTTGCCGTGACCTCAACTATCTCGGCACACACAGCACTGTATGCACCTTCTTTTCATTTGTGTGTGTGTGTGTGTGCTGAACTTCGTGGCCCGTGTTCGTGTGTTGAACCTGCTCCGATGGTCTGCTGTAGGAACTAGCTAAAAGAAAGTCAACCAAAAAGTAGCTTTCTTTTTTCTTTTTAAGGGGGTCGCTGGACAACTTCTCCACGCTCACATTTAAGACCACCAATGCTGCCGAACAACTGACTGAACCAGCAGCAACTCTTTCTTTTTTGGGGGGGGATATAAGAAAAAAAAAAAAAACCCAAGTTCACGTCTCAGAGAGAAATCGTTTGTTTTTGTGATTTTCGTTTC 4 2 3' arm Dicentrarchus_labrax mirnest 100 100 -24.2 ......((((((((((((.(((..((((((.............)))))).)))))))))))))))..... (-24.2)