mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CACAGTTTTAAATGATATTAC GGAGTCTCCAAAGCTGTCTC CTTGATGATGACACAGTTTTAAATGATATTACGTTCATAGATGAAGATGCGGTGGAGTCTCCAAAGCTGTCTCCCATAGAA GTTATCTAAAAAAGAACCTTTCCCCCCTTGATGGTTCTAACAAGGACATTGAACTATTGTTGCACATTGAAGCTGGTCATGCTCATCACACATATCTGGAGTACAGAAAAGCTGCACAGCATTTTGCTTCTGGCAAAAAAATAGCTGCCCTTGAAGTGAGCCTAACAGGAGCCATGGGCAGACGTACACGCTATCAAGAGGATGCCAAAGCTCAGTTGGTTCTGAGGGTGGAAAGGAAAGAAGTCAATGACTGGAATGAGACATTGAGTACCAACATTTGTGACTTGCCAAAGAATCTTCCACTTGATGATGACACAGTTTTAAATGATATTACGTTCATAGATGAAGATGCGGTGGAGTCTCCAAAGCTGTCTCCCATAGAACTGGCATTAGTTCTTGGTCTTATGGAAAGTTACAGGCGCAGCTGTGCACAAGATCGTCTTACAGATGAAGAAGTGCTGACATATCTTGCTTTTATTTTAAGTCAAACAAACAATTGGAACAT 5 1 5' arm Biomphalaria_glabrata mirnest 100 100 -12.9 .((.(((..((.((((((((....(((.((((...(((........)))..)))).)))...)))))))).)).))).)). (-12.9)