mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCATCATCATCATCATCATCA ATGAAAGGTGGTTTTGGTGCTT GCAAGATCCTAGCTGGGTAGCCATGAAAGGTGGTTTTGGTGCTTGTGAGTATGATGAATCATCCATGGAAGATTCAACAAACTCAGCGGCTTCTTCTTCTTCTTCAATAGATTTATTAGAAGATGCATCTTCTGCAGCATCATCATCATCATCATCATCGACATCACATGCGAATG AATGAAACCCACAAAATATTCTCATAGCATTCAAAAAAAAAAAAAAAATAAAAAATTCAAGGAAAATAATCAATACCCTTTTCTTCTACAAGATAATATTTGCCATTATATTATTCATAGCATGTATATATATGCCTCCTAAGAAAAAACCACATAGCTAGATAAGAAGTCTTCAGCAACATCATCTTCTATATATTCTCTTCTTCTTCTTCTTCTCTCTTTCCTGTTGCTCGTGATCATCAGAATGGCTGAAGCAGCTGCAAAGCAAAATTTTTTGGATGTGACTTTGCAGAAGATAAACCCTAATGGAGAACTGCAGCAAGATCCTAGCTGGGTAGCCATGAAAGGTGGTTTTGGTGCTTGTGAGTATGATGAATCATCCATGGAAGATTCAACAAACTCAGCGGCTTCTTCTTCTTCTTCAATAGATTTATTAGAAGATGCATCTTCTGCAGCATCATCATCATCATCATCATCGACATCACATGCGAATGGACCTCTATATGAATTATCAGAGCTCGTGGCCCAACTTCCCATCAAGAGAGGCCTTTCAAAGTTTTATGAAGGGAAATCTCAGTCTTATACATCTCTAGCAAGTGTGAGGAGCATAGAAGATCTTGCAAAGAAAGTGACTGCAACTCCATACAGATCTAAAATGAAGTCTTGCAAGAGCTATGCTGGGGTTTTAGATAGCCACAAGTGCTACAGTCCGAAGGCTACCATATCAAAAAGGGCTTCACCATATCAAAAAC 5 1 3' arm Hevea_brasiliensis mirnest 100 100 -43.6 ((...((((.....)))).)).((((..((((((..((((((...(((((.((.((((((.((....)).)))))).)).)))))((.((.((((((...(((.....)))......)))))).)).......)).))))))..)))))).))))..(((.(((...))))))... (-43.6)