mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCGGACCAGGCTTCATTCCTC GGAATGTTGTCTGGTTCAAGG ATTGCTTGCTAGGAAGCTTTTCTTTTTGAGGGGAATGTTGTCTGGTTCAAGGTCATGCGATGCTATACATATGATTTGTTTACCTTTTAGCTATTTCTCCTCGGACCAGGCTTCATTCCTCTCAATTACTGCTTCCATATACATCCATA AGGATCCCCCGGGCTGCAGGAATTCGGCACGAGGTCAAAAGAAAGCAGACACAAATGCTAGCTTCAAGAAATGACCACGACCCCCCGGACCCCATGCTCTTTCTCTCTCCCTCTCAAAGCCCACTTTTCCTTTTCTTTTAGGTAAAAGCAAATGATTATCTTCATCATCATGTTCATTGTCTATGATTTTTAGCACAAACCCACAAATTCTTGTCAAAAGGATTTGGTTTTTTCACCCTCTGGATCCGCACAACGAAAGAAGATGAAAAAAGAATGGAGTGGTTTGCTGAGGAAGAAGATAGCTATTGCTTGCTAGGAAGCTTTTCTTTTTGAGGGGAATGTTGTCTGGTTCAAGGTCATGCGATGCTATACATATGATTTGTTTACCTTTTAGCTATTTCTCCTCGGACCAGGCTTCATTCCTCTCAATTACTGCTTCCATATACATCCATATGCAGCAGGAATATTATACACTTCTTCAGCTGCTCATCAATCCAATCAACTTCAAGATTTAGA 3 0 3' arm Hevea_brasiliensis mirnest mir-166 0.000009 ptc-MIR166i 0.000000002 -46.7 ...........((((((........((((((((((((..(((((((((.(((.........((((.(((.......)))........)))).......))).)))))))))..)))))))))))).....))))))............. (-46.7)