mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGGCTTCTGTAGATGAACCAA GGTTTGCTGTCGGAGGTTGTT CCCTTTTACTTTGGTTTGCTGTCGGAGGTTGTTTGATGATGAGGCTTCTGTAGATGAACCAAGGCGCACTG TGCTTGAGGTCAATGGCATGCAGCTTTATGGAAAATCTCGCCGAGAAGCAGTCTCCTTTCTTAAAGAAGTGCCACCCCCTTTTACTTTGGTTTGCTGTCGGAGGTTGTTTGATGATGAGGCTTCTGTAGATGAACCAAGGCGCACTGAAACCTCTCTTCCTGAGGTGGAGGTTGACCACAATATGGATGTCAATACTGAAGAAGATGATGATGGGGAATTAGCACTGTGGTCCCCTGAAGTCAAGATTGTTGAACTAGTAAAAGATTGTAAAGGTTTGGGATTCAGCATTTTGGATTACCAGGACCCTTTAGATCCTACAAGATCAGTGATTGTGATCCGCTCCCTGGTGGCAGATGGTGTAGCAGAAAGAAGTGGGGAACTATTACCTGGAGACCGCCTGGTCTCAGTCAATGAATACTGTTTGGACAACACCTCACTTGCTGAAGCTGTGGAAATATTGAAAGCTGTGCCACCAGGCGTAGTACGCCTTG 1 2 3' arm Pongo_abelii mirnest 100 100 -18.9 ........(((((((((((((.((((((((............))))))))))).))))))))))....... (-18.9)