mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTTGTTTTGTTTTTTCTTTTT CAAGGCAGCACAAAGCAGATC CAGGTACAAGGGCAAGGCAGCACAAAGCAGATCAGGAGAATGAAGAGGGAATGCTTTGGTTTTTTGTTTTGTTTTGTTTTTTCTTTTTCAAGTAACT GGGGACAGAGCAGGTACAAGGGCAAGGCAGCACAAAGCAGATCAGGAGAATGAAGAGGGAATGCTTTGGTTTTTTGTTTTGTTTTGTTTTTTCTTTTTCAAGTAACTAAAACAGCATCTACATGTAGAGTGTTGTGGAGAGCTGAGACCAGGGTAAAGTCGTCAAGTGCAGCATCAGTACTGTGAGACCTGCCAGCCCCTGGAGAGGGTCAGCCGAGAATCTGGTAGTGAAGCCTGTCTAGGGTCCCGGCACCCTCACCCTCAGCCACCTGCAGAGCGACCAGGGCCCCANANACTAGCCCAGTTCTNAAGTGGGCAGGGGTGCTGCCAGAGCCCTCTGCCCCTTATATTGANACCCTGCTTTCAGCACAGGCCAACCGTTGGCCACCATGTCACATTCTGAGTGAGTGTCACAGGTCCCTAACAATAATTTTTCTGATCTGGAGCATATCAGCAGAATGCTTAGCCTCAAGGGGCCTGGCAGCTGTAATGTTTGATTTATGATGAGAACTATCCGAGGCCACCCTTGGCCTCCAAATGAGCTGCTCTAGG 3 0 3' arm Pongo_abelii mirnest 100 100 -22.7 .((.(((..(((.((((.((.((((((((((.(((((((.(((((........))))).))))))).)))))))))).)).)))).)))..))).)) (-22.7)