mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTCTTTGCTTGCCCAATGCTT GCACCACGGAGAGCAAATGGAA GCTCCTAACGGAGATGTGTAGCTCTTTGCTTGCCCAATGCTTGAGGAGTGCCTACAGCCATCCATGTTGCTGAAAGACGAGTTGGAGGTACCAAAGGCACCACGGAGAGCAAATGGAACATCTCTCATGGGTGCAA GACAACTGCACCTACAGTTGCATTCTGCCNNNCGACGAAACCGCCACAGCAACGTTACCCCTCATCGTTGCAGGCTGCATTTCACTCAGACCTCAAACATGACGCTGAACCTGGTAGCAAGAGGAACGGATATGATGGCAGCACCCAGCGCAACGCCAAATATACGGTGTGAGATGGAGAATGTAGCGCTCAGCTGTGGCTTCTTCAGAGGAAGATGGGGTGACAGTGGGCGGTTGGCAACAGGAGCCGACAGGGGACGACTTGTATGTAGGGATCGGTTTCCAGATGGAGGCATCTTCTGTCGCAGAGCTCCTAACGGAGATGTGTAGCTCTTTGCTTGCCCAATGCTTGAGGAGTGCCTACAGCCATCCATGTTGCTGAAAGACGAGTTGGAGGTACCAAAGGCACCACGGAGAGCAAATGGAACATCTCTCATGGGTGCAAAGCGGGTGTTGCTGTGATACTTGTCCATTCCTTCCTCCGCGTTGCCGCGCGGGGCGAGAGCGGAGCGGAAGCTCGGTGAAGATTTGGGGACGAACGAGACGACGGCGACGGAGACGGCGCCTGCTTCCCCTTCCTGTGGTTTCCCTTCCGTACCGCTTGGACGAAGGAAGATGCACCCC 5 1 5' arm Elymus_wawawaiensis_x_Elymus_lanceolatus_mixed_EST_library mirnest 100 100 -42.9 ((.((((..((((((((....((.(((((((.((...(((((.....((((((.((((......((((.......)))).)))).))))))...)))))....)).))))))).)).))))))))..)))).)).. (-42.9)