mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGGTGACAGAGCGAGACTCTG GAGAATTGCTTGAACCCGG GAGGCTGAGGCAGAGAATTGCTTGAACCCGGGAGGTGGAGGTTGCAGTGAGCCAAGATCACGCCACTGTGCTCCAGCCTGGGTGACAGAGCGAGACTCTGTCTAAAAAA AGTGAGTTCACAAACAATATGATAACCGAAAGATACTACTGGTTCAAAAGAAAACTGGATTACATAAGACTTTCAGAATCTAAAATGAAACTAATAAACATTAAAAGATGTTAGCAACGTGATACAAGAAATAATGAAACATTTAAAATAAATAACATAATAAATGGAGTAGGCCAGGCGTGGTGACTCATGCCTGTAATCCCAGCACTTTGGAAGGCTGAGGCAGGTGGATCATGAGGTCAGGAGTTCAAGACCAGCCTGAAAGATGGTGTAACCCTGTCTCTACTAAAAATACCAAAATTAGCTGGGCATGGTGGTGGGTGCCTGTATTCCTAGCTACCCGGGAGGCTGAGGCAGAGAATTGCTTGAACCCGGGAGGTGGAGGTTGCAGTGAGCCAAGATCACGCCACTGTGCTCCAGCCTGGGTGACAGAGCGAGACTCTGTCTAAAAAAAAAAAGGATAGATACAGGTGCAGAATAAATTAGTTGGAAAATCAGGCTGAGAAACCCCCAGAAGGAAGCAAGAAAAAGAATGTAGGAAATACGAAAGCGGATTTAAGCAAGATGGAAGCCAGAAGTAGGTGTGCCAACATTCAGGTAAGAGGCCTAGAAGGAGGAAAAA 4 2 3' arm Pongo_abelii mirnest Metazoa_SRP 2e-33 ppy-mir-1273 5e-37 -44.9 .......((((((((..((((((..(((((((...(((((..(((((((.((.........)))))))))))))).)))))))....))))))..))))))))...... (-44.9)